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Note: These tools are only available on select PODs. At this time of this writing, it included the GSAF PODand Educational PODs.
| Software | Description | Path |
|---|---|---|
| consed | contig assembly tools | /usr/local/genome/consed/ |
| phrap | contig assembly tools | /usr/local/genome/bin/ |
| phred | contig assembly tools | /usr/local/genome/bin/ |
| glimmer | micobial gene annotations | /usr/bin/glimmer2 /usr/bin/build-icm /usr/bin/extract /usr/bin/long-orfs |
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The following web application software is available only on specific PODs or nodes of a pod. Following the specified link all PODs. Accessing a POD node with your web browser will take you to an application login page where your BRCF account credentials can be used to access the application's web interface. Your default directory will be your Home directory. See Home directory quotas for important storage-quota related information.
| Software | Description | Location | URL | ||||
|---|---|---|---|---|---|---|---|
| JupyterHub Server | Python Notebook Server | gsafcbig01 gsafcbig02 ccbbcomp02 iyercomp04 | https://gsafcbig01.ccbb.utexas.edu/|||||
| https://iyercomp04.ccbb.utexas.edu/R Studio Server | R Studio Web Interface | lambcomp01 | https://lambcomp01.ccbb.utexas.edu/ | Both JupyterHub Server and R Studio Server | The specified URL will present a page with links to both web applications. | educcomp01 educcomp02 | https://educcomp01.ccbb.utexas.edu https://educcomp02.ccbb.utexas.edu |
Special POD software
The following software is available only on specific PODs or nodes of a pod.
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