Versions Compared

Old Version 52

changes.mady.by.user Eric Rostetter

Saved on

compared with

New Version 53

changes.mady.by.user Eric Rostetter

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Additional R Tools

SoftwareDescription
abindcargocowplotcurlforeachgganimateGGallyggpubrggrepelgifskigridSVGigraphjpegleapslme4lubridatemirbase.dbmixdistmultcompmvtnormnetworkpheatmapplotlyplotROCplotrixquantmodRMySQLsnasqldftidyrVGAMvioplot

GNU R package “Combine multi-dimensional arrays”

ade4

GNU R package “Analysis of Ecological Data : Exploratory

ape

GNU R package “Analyses of Phylogenetics and Evolution”

bitops

GNU R package implementing bitwise operations

catools

GNU R package “Tools: moving window statistics, GIF,

cargo

cluster

GNU R package for cluster analysis by Rousseeuw et al

cowplot
curl

data.table

GNU R package “Extension of data.frame”

dbi

GNU R package “R Database Interface”

dichromat

Color schemes for dichromats

digest

GNU R package “Create Cryptographic Hash Digests of R

evaluate

GNU R package “Parsing and Evaluation Tools that Provide

foreach

futile.logger

GNU R package “A Logging Utility for R”

futile.options

GNU R package “Futile options management”

gdata

GNU R package “Various R Programming Tools for Data

getopt

GNU R package “C-like getopt behavior.”

gganimate
GGally

ggplot2

GNU R package “An Implementation of the Grammar of

ggpubr
ggrepel
gifski

gplots

GNU R package “Various R Programming Tools for Plotting

gridSVG

gtable

GNU R package “Arrange grobs in tables.”

gtools

GNU R package “Various R Programming Tools”

igraph
jpeg

labeling

GNU R package “Axis Labeling”

lambda.r

GNU R package “Modeling Data with Functional Programming”

lattice

GNU R package “Lattice Graphics”

leaps

GNU R package “regression subset selection”

lme4

GNU R package for linear mixed effects model fitting

lubridate

matrix

GNU R package of classes for dense and sparse matrices

matrixstats

R package “Methods that apply to rows and columns of a matrix”

mirbase.db
mixdist
multcomp

munsell

GNU R package “Munsell colour system”

mvtnorm
network

nlme

GNU R package for (non-)linear mixed effects models

optparse

GNU R package “Command line option parser.”

permute

GNU R package “Functions for Generating Restricted

pheatmap
plotly
plotROC
plotrix

GNU R package “Various plotting functions”

plyr

GNU R package “Tools for Splitting, Applying and Combining

proto

GNU R package “Prototype object-based programming”

quantmod

r.methodss3

GNU R package “Utility function for defining S3 methods”

rcolorbrewer

GNU R package providing suitable color palettes

rcpp

GNU R package “Seamless R and C++ Integration”

rcurl

GNU R package “General Network (HTTP/FTP/…) Client

relimp

GNU R package “Relative Contribution of Effects in a

reshape2

GNU R package “Flexibly Reshape Data: A Reboot of the

rggobi

GNU R package for the GGobi data visualization system

rgl

GNU R package for three-dimensional visualisation using OpenGL

rgtk2

GNU R binding for Gtk2

rmpi

GNU R package interfacing MPI libraries for distributed computing

RMySQL

rserve

GNU R Rserve tcp/ip server and sample clients

rsqlite

GNU R package “SQLite Interface for R”

scales

GNU R package “Scale Functions for Visualization”

scatterplot3d

GNU R package “3D Scatter Plot”

sna

sp

GNU R package “Classes and Methods for Spatial Data”

sqldf

stringr

GNU R package “Simple, Consistent Wrappers for Common

tcltk2

GNU R package “Tcl/Tk Additions”

testthat

GNU R package “Testthat code. Tools to make testing fun

tidyr

vegan

GNU R package “Community Ecology Package”

VGAM
vioplot

xml

GNU R package “Tools for Parsing and Generating XML Within

xtable

GNU R coerce data to LaTeX and HTML tables

Additional R BioConductor Tools

...