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All POD compute servers have identical BioLinux 8 Ubuntu 19.04 Operating System configurations, which is based Ubuntu 14.04 LTS. See http://environmentalomics.org/bio-linux-software-list/.
A number of additional tools and packages have been installed on all compute servers, as listed below. Note that some tools that have many sub-program binaries, or for which multiple versions are installed, are not available on the standard PATH. The /stor/software/opt directory on your system contains installation directories for these tools, which can be added to your PATH as needed.
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| Software | Description | ||
|---|---|---|---|
| build-essential | gcc, g++, make, cmake, patch, autoconf, automake, m4, bison, libtool | ||
| emacs, vi, vim, ed | text editors | ||
| mail, mailx, postfix | mail programs | ||
| perl | perl interpretor | ||
| python 2 | python version 2 interpretor | ||
| python 3 | python version 3 interpretor | ||
| ruby | ruby programming language | ||
| samba | Windows SMB/CIFS file and printer sharing protocol and applications | ||
| screen, tmux | Text window managers (multiplexer) | ||
| ssh | Secure Shell (remote access) | ||
| sudo | Root access for POD delegates only | ||
| tar | File archiving utility | ||
| wget, curl | Remote file/url transfer utilities | whois | Whois directory client. |
| gzip, zip, unzip | File compression and archiving tools. |
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