...
| Software | Description |
|---|---|
| blaze | An interface to query data on different storage systems |
| cutadapt | Finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads |
| dendropy | phylogenetic computing |
| leukgen-disambiguate | |
| MACS2 | Model Based Analysis for ChIP-Seq data |
| maplot | |
| matplotlib | python 2D plotting library |
| networkx | Creation, manipulation, and study of the structure, dynamics, and functions of complex networks. |
| nimfa | Nonnegative matrix factorization |
| numpy | scientific computing with Python |
| pandas | Python Data Analysis Library |
| patsy | |
| pip | Python installation program (to install python modules) |
| plotly | |
| pysam | |
| pyvttbl | |
| reportlab | |
| rpy2 | Python interface to R |
| seaborn | |
| scipy | Collection of Python software for mathematics, science, and engineering. |
| sklearn | Machine Learning in Python |
| skimage | Image processing in Python |
| statsmodels | Estimation of statistical models |
Additional R Tools
| Software | Description |
|---|---|
| curl | |
| igraph | |
| jpeg | |
| lubridate | |
| mirbase.db | |
| mixdist | |
| network | |
| quantmod | |
| RMySQL | |
| sna | |
| sqldf | |
| tidyr | |
| VGAM | |
| vioplot |
...