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| Software | Description | Path | in genome_client.pp |
|---|---|---|---|
| consed | contig assembly tools | /usr/local/genome/consed/ | y |
| phrap | contig assembly tools | /usr/local/genome/bin/ | y |
| phred | contig assembly tools | /usr/local/genome/bin/ | y |
| glimmer | micobial gene annotations | /usr/bin/glimmer2 /usr/bin/build-icm /usr/bin/extract /usr/bin/long-orfs | y |
| ISEScan | identification of insertion sequence elements in genomes | /usr/lib/libssw.so | y |
| FragGeneScan | requirement of ISEScan | /usr/bin/FragGeneScan1.30 | y |
Molecular Structures Client
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