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SoftwareDescription

in common.yaml

listed in library()
abind

GNU R package “Combine multi-dimensional arrays”

yy

ade4

GNU R package “Analysis of Ecological Data : Exploratory


y
ape

GNU R package “Analyses of Phylogenetics and Evolution”


y

bitops

GNU R package implementing bitwise operations


y
blogdownCreate Blogs and Websites with R Markdownyy
bookdown

Authoring Books and Technical Documents with R Markdown

yy

catools

GNU R package “Tools: moving window statistics, GIF,

yy
carCompanion to Applied Regressionyy
cargo
y

cluster

GNU R package for cluster analysis by Rousseeuw et al


y
colourpicker

 A Colour Picker Tool for Shiny and for Selecting Colours in Plots

yy
cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'

yy
curlA Modern and Flexible Web Client for Ryy

data.table

GNU R package “Extension of data.frame”


y

dbi

GNU R package “R Database Interface”



dbplyrR Database Interfaceyy
dendextendExtending 'dendrogram' Functionality in R
y

dichromat

Color schemes for dichromats


y

digest

GNU R package “Create Cryptographic Hash Digests of R


y
emmeans

Estimated Marginal Means, aka Least-Squares Means

yy

evaluate

GNU R package “Parsing and Evaluation Tools that Provide


y
fivethirtyeight

Data and Code Behind the Stories and Interactives at 'FiveThirtyEight'

yy
forcats

Data and Code Behind the Stories and  Interactives at 'FiveThirtyEight'

yy
foreachProvides Foreach Looping Constructyy

futile.logger

GNU R package “A Logging Utility for R”


y

futile.options

GNU R package “Futile options management”


y

gdata

GNU R package “Various R Programming Tools for Data


y

getopt

GNU R package “C-like getopt behavior.”



gganimateA Grammar of Animated Graphicsyy
GGallyExtension to 'ggplot2'yy
ggExtra

Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements

yy

ggplot2

GNU R package “An Implementation of the Grammar of


y
ggpubr'ggplot2' Based Publication Ready Plotsyy
ggrepel

Automatically Position Non-Overlapping Text Labels with 'ggplot2'

yy
ggsci

Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

yy
ggsignifSignificance Brackets for 'ggplot2'yy
gifskiHighest Quality GIF Encoderyy
glmnet

Lasso and Elastic-Net Regularized Generalized Linear Models

yy

gplots

GNU R package “Various R Programming Tools for Plotting


y
gridSVGExport 'grid' Graphics as SVGyy
gtBuild display tables from tabular data with an easy-to-use set of functionsy

gtable

GNU R package “Arrange grobs in tables.”


y

gtools

GNU R package “Various R Programming Tools”


y
haven

Import and Export 'SPSS', 'Stata' and 'SAS' Files

yy
igraphNetwork Analysis and Visualizationyy
interactions

Comprehensive, User-Friendly Toolkit for Probing Interactions

yy
jpegRead and write JPEG imagesyy

labeling

GNU R package “Axis Labeling”


y

lambda.r

GNU R package “Modeling Data with Functional Programming”


y

lattice

GNU R package “Lattice Graphics”


y
latticeExtraExtra Graphical Utilities Based on Latticeyy
leaps

GNU R package “regression subset selection”

yy
libssl-devprereq?y
libcairo2-devperreq?y
libxt-devprereq?y
libgmp10prereq?y
libgmp-devprereq?y
libmpfr6prereq?y
libmpfr-devprereq?y
lme4

GNU R package for linear mixed effects model fitting

yy
locfit

Local Regression, Likelihood and Density Estimation

yy
lubridateMake Dealing with Dates a Little Easieryy

matrix

GNU R package of classes for dense and sparse matrices


y

matrixstats

R package “Methods that apply to rows and columns of a matrix”


y
mirbase.dbmiRBase: the microRNA database
y
mixdistFinite Mixture Distribution Modelsyy
modelr

Modelling Functions that Work with the Pipe

yy
multcomp

Simultaneous Inference in General Parametric Models

yy

munsell

GNU R package “Munsell colour system”


y
mvtnormMultivariate Normal and t Distributionsyy
networkClasses for Relational Datayy

nlme

GNU R package for (non-)linear mixed effects models


y
nloptrR Interface to NLoptyy
ontologyIndexFunctions for Reading Ontologies into Ryy

optparse

GNU R package “Command line option parser.”



permute

GNU R package “Functions for Generating Restricted



pheatmapPretty Heatmapsyy
pbkrtest

Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison

yy
plotlyCreate Interactive Web Graphics via 'plotly.js'yy
plotROC

Generate Useful ROC Curve Charts for Print and Interactive Use

yy
plotrix

GNU R package “Various plotting functions”

yy

plyr

GNU R package “Tools for Splitting, Applying and Combining


y
polynom

A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations

yy

proto

GNU R package “Prototype object-based programming”

yy
quantmodQuantitative Financial Modelling Frameworkyy
quantregQuantile Regressionyy

r.methodss3

GNU R package “Utility function for defining S3 methods”


y

rcolorbrewer

GNU R package providing suitable color palettes


y

rcpp

GNU R package “Seamless R and C++ Integration”


y

rcurl

GNU R package “General Network (HTTP/FTP/…) Client


y

relimp

GNU R package “Relative Contribution of Effects in a

y

reshape2

GNU R package “Flexibly Reshape Data: A Reboot of the

yy
reticulateInterface to 'Python'yy

rggobi

GNU R package for the GGobi data visualization system

y

rgl

GNU R package for three-dimensional visualisation using OpenGL



rgtk2

GNU R binding for Gtk2



rmpi

GNU R package interfacing MPI libraries for distributed computing

y
RMySQLDatabase Interface and 'MySQL' Driver for Ryy
ROCR

Visualizing the Performance of Scoring Classifiers

yy

rserve

GNU R Rserve tcp/ip server and sample clients

y
rstatix

Pipe-Friendly Framework for Basic Statistical Tests

yy

rsqlite

GNU R package “SQLite Interface for R”


y
rvestEasily Harvest (Scrape) Web Pagesyy

scales

GNU R package “Scale Functions for Visualization”


y

scatterplot3d

GNU R package “3D Scatter Plot”

yy
servr

A Simple HTTP Server to Serve Static Files or Dynamic Documents

yy
SeuratTools for Single Cell Genomicsyy
shapeFunctions for Plotting Graphical Shapes, Colorsyy
shinyWeb Application Framework for Ryy
shinyjs

Easily Improve the User Experience of Your Shiny Apps in Seconds

yy
SignacA framework for the analysis of single-cell chromatin datay
snaTools for Social Network Analysisyy

sp

GNU R package “Classes and Methods for Spatial Data”



sqldfManipulate R Data Frames Using SQLyy
statnet.common

Common R Scripts and Utilities Used by the Statnet Project Software

yy

stringr

GNU R package “Simple, Consistent Wrappers for Common


y

tcltk2

GNU R package “Tcl/Tk Additions”

yy

testthat

GNU R package “Testthat code. Tools to make testing fun


y
tibbleSimple Data Framesyy
tidyrTidy Messy Datayy
tidyverseEasily Install and Load the 'Tidyverse'yy
transformrPolygon and Path Transformationsyy

vegan

GNU R package “Community Ecology Package”



VennDiagramGenerate High-Resolution Venn and Euler Plotsyy
VGAMVector Generalized Linear and Additive Modelsyy
vioplotViolin Plotyy
xfunMiscellaneous Functions by 'Yihui Xie'yy

xml

GNU R package “Tools for Parsing and Generating XML Within

yy

xtable

GNU R coerce data to LaTeX and HTML tables


y

...