...
/wiki/spaces/GSAF/pages/38797730
/wiki/spaces/GSAF/pages/38798143
Illumina HiSeq
Some simple commands to use to search for adaptor-dimers:
In Illumina data:
| Code Block |
|---|
grep -c GATCGGAAGA <filename.fastq>
|
This works for a standard Illumina genomic DNA library made with TruSeq V3 Y adaptors, and since the Y adaptors are RC's on each end, works equally well for read 1 and read 2.