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/wiki/spaces/GSAF/pages/38797730
/wiki/spaces/GSAF/pages/38798143
Illumina HiSeq
rRNA bacterial metagenomics samples
Some simple commands to use to search for adaptor-dimers:
In Illumina data:
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grep -c GATCGGAAGA <filename.fastq>
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For small-rna library/single stranded RNA library, The previous command will work for read 1. For read 2, use something like:
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grep -c ATCGTCGGAC <filename.fastq>
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