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What about the case where the files you want are scattered in sub-directories? Consider a typical GSAF project directory structure, where Fastq files are nested in subdirectories:

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Here's a solution using find and xargs:

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rm -rf ~/test; mkdir ~/test; cd ~/test
find /stor/work/CCBB_Workshops_1/bash_scripting/fastq -name "*.txtgz" | xargs ln -s -fsf -t .

Removing file suffixes

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