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For some of the discussions below, we'll use a couple of data files from the GSAF's (Genome Sequencing and Analysis Facility) automated processing that delivers sequencing data to customers. These files have information about GSAF's sequencing runs (a machine run, with many customer jobs), sequencing jobs (representing a set of customer samples), and samples (a library libraries of DNA molecules to sequence on the machine), grouped into sets assigned as jobs, and sequenced on GSAF's sequencing machines as part of runs.
Here are links to the files if you need to download them after this class is over (you don't need to download them now, since we'll create symbolic links to them).
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