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titleSolution
Code Block
languagebash
# be sure to use a different file descriptor (here 4)
while IFS= read line <&4; do
  jobName=$( echo "$line" | cut -f 1 )
  sampleName=$( echo "$line" | cut -f 3 )
  if [[ "$jobName" == "" ]]; then continue; fi
  echo "Project_${jobName}/${sampleName}.fastq.gz"
done 4< <(tail -n +2 sampleinfo.txt) | tee pathnames.txt

field delimiter issues

Always be As we've already seen, field delimiters are tricky! Be aware of the default field delimiter for the various bash utilities, and how to change them:

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