Because different versions exist, you need to make sure that you are using the right version: Code Block |
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language | bash |
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title | Check that you remember how to check if you have access to a command, what version that command is, load a different version, and verify that is the version being used |
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collapse | true |
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| which bedtools # check if you have access to bedtools
bedtools --version # determine what version of bedtools you are using
# This will tell you that the bedtools you are using is in the $BI/bin directory and that you are using version v2.20.1-2-g6f0be00
module load bedtools # load the TACC version of bedtools, remember module spider module avail and module list can help you find exactly what module you are looking for
which bedtools
bedtools --version
# This will now tell you that you are using version v2.25.0 which is located in the /opt/apps/bedtools/2.25.0/bin dreictory. |
Because it is computationally intensive, you need to make sure you are not on the head node Code Block |
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language | bash |
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title | Check that you remember how to get an idev node (remember to change your reservation to day 3) |
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collapse | true |
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| idev -m 180 -r CCBB_Bio_Summer_School_2016_Day3 -A UT-2015-05-18 -N 2 -n 8 |
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