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Setup to follow along
Login to ls5 or stampede at TACCTACCTACC. Execute these commands to set up access to the the multiqc binary:
lonestar5
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module load python export PATH="/work/projects/BioITeam/ls5/bin/multiqc-1.0:$PATH" export PYTHONPATH="/work/projects/BioITeam/ls5/lib/python2.7/annab-packages:$PYTHONPATH" # make sure it is working... multiqc --help |
stampede
| Code Block | ||
|---|---|---|
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module load python
export PATH="/work/projects/BioITeam/stampede/bin/multiqc-1.0:$PATH"
export PYTHONPATH="/work/projects/BioITeam/stampede/lib/python2.7/annab-packages:$PYTHONPATH"
# make sure it is working...
multiqc --help |
x
Produce a consolidated FastQC report
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