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DNA-Seq Variant Calling Pipeline: Identification and annotation of SNPs and/or somatic mutations compared to reference genome. 10 hour minimum ($470 $730 internal, $600 $930 external) per project.
RNA-Seq Analysis Pipeline: This pipeline uses an annotated genome to identify differential expressed genes/transcripts. 10 hour minimum ($470 $730 internal, $600 $930 external) per project.
RNA-Seq Downstream Analysis: Machine learning methods (including clustering, dimensionality reduction, classification and regression modeling, resampling techniques, etc.), ANOVA modeling, and empirical Bayes analysis. 12 hour minimum ($564 $876 internal, $720 $1116 external) per project. This includes 1 hour of training, if needed.
ChIP-Seq Peak Calling Pipeline: This pipeline identifies regions of significant protein binding ("peaks") based on an annotated genome. 10 hour minimum ($470 $730 internal, $600 $930 external) per project.
Transcriptome Assembly: Assembly of RNA-seq short reads into a transcriptome. 12 hour minimum ($564 internal$876 internal, $720 $1116 external) per project.
Protein Identification and Validation: Identify peptides/proteins given raw mass-spec data, 6 hour minimum ($282 $438 internal, $360 $558 external) per project.
Differential Protein Expression Analyses: Differential protein expression analyses, 6 hour minimum ($282 $438 internal, $360 $558 external) per project.
Post-translational modification (PTM) identification: Identify and analyze PTMs in large-scale, 12 hour minimum ($564 internal$876 internal, $720 $1116 external) per project.
Rates
Internal customers (payment from a UT Austin account): $47$63/hour
External customers (anyone paying from a non-UT Austin account): $60$93/hour
Where to go from here
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