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Code Block
titlesolution
collapsetrue
#Looking up nlaIII, we see it's cut site:
#     CATG'
#    'GTAC
  
#check if we see this cut site in the forward reads
grep CATG Lib01_R1.fastq | wc -l


#compare with total read count
expr $(cat Lib01_R1.fastq | wc -l) / 4


Next run the program FastQC on the reads

Code Block
titleFastQC
collapsetrue
module load fastqc
mkdir raw_Fastqc_Restults
fastqc -o raw_Fastqc_Restults/ -f fastq Lib01_R*.fastq


#scp the resulting .html files to your personal computer to see