The #1 most likely issue here will be that you see samtools version 1.7 rather than 1.9 and will suggest that somewhere in other modifications of the GVA2021 environment, we introduced a change to either samtools or opensssl. If you experience this error, let me know, I'm trying to track down if this is something that a tutorial specifically caused, or if its an error of installing some other tool into this environment mistakenly.
The simplest solution will be to create a new conda environment, and install just samtools, bcftools, and openssl verison 1.0 in it, as we did when we originally installed them into the GVA2021 environment. Code Block |
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| conda create --name GVA-samtools -c bioconda samtools bcftools openssl=1.0
conda activate GVA-samtools |
If you need to do this, make sure you are in the new GVA-samtools conda environment before using any of the samtools commands listed here, or switch to it when you get the error message about libcripto |