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Tutorial: Using samtools to identify SNVs
Tutorial: Using SVDetect to identify SV
Bonus Presentation: Read Mapping Details and File Formats
Wednesday, June 22nd. Day 3 – Visualization and User specific tutorials
Tutorial: Visualization: Bacterial genome variants the easiest way – breseq
At this point in the course, you have the basic tools that will help you regardless of what type of research you are involved in. The remainder of the course is full of topics that are more specific to different research areas. They are divided into broad categories to help you decide which ones you want to complete during the remaining time. If you are unsure just ask and I'll help identify ones which may be more applicable to your work.
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