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This is the CURRENT version of the manual (which may not match the version we have installed).Some simple commands to run velvet (
Simple Velvet commands for paired-end illumina data
There are many options for all these commands that can be played around with, but these are the most basic assembly instructions).For paired-end illumina data:
1. Preprocess the illumina fastq files - Velvet needs the R1 and R2 reads in one single file.
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