...
The following is a categorized list of software available through the UT GSAF and/or TACC's life sciences group. Each page lists a summary of the software, the hardware it is currently installed on, links to user documentation, and helpful tips.
Many of these are available via the TACC module system (use module keyword or module spider to search).
In addition, the BioITeam maintains executables in /corral-repl/utexas/BioITeam/bin; we advise adding this directory to your path.
Contents
- Getting an account of GSAF's Galaxy instance
- Getting an account on GSAF server-fourierseq
- Getting started with Unix and Perl
- Tips for working with TACC resources
- References (by organism)
- General purpose tools
- Galaxy Workflows
- Microarray data analysis tools
- NGS Data Quality Control Tools
- Mappers / Aligners
- Gene prediction tools
- SNP discovery
- Splice Junction discovery
- Genome Alignment and Visualization
- De novo assembly
- 454 Analysis tools
- Useful scripts
- Software users group meetings
- Variant calling
- ZOHO Information
- Extracting barcode split data from SOLiD 5500 XSQ files
- R and R packages
...