Versions Compared

Old Version 46

changes.mady.by.user Jeffrey E Barrick

Saved on

compared with

New Version 47

changes.mady.by.user Deatherage, Daniel E

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Warning
titleSubmit to the TACC queue or run in an idev shell

Create a commands file and use launcher_creator.py followed by qsub.

Expand
titleI need some help figuring out the options...

Put this in your commands file:

Code Block
bwa aln -t 6 -f bwa/SRR030257_1.sai bwa/NC_012967.1.fasta SRR030257_1.fastq
bwa aln -t 6 -f bwa/SRR030257_2.sai bwa/NC_012967.1.fasta SRR030257_2.fastq

Why did we use -t 6 instead of -t 12 for multithreading? Both of our commands are going to go to a single node on Lonestar, so they should share the 12 available cores.

...