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Code Block
languagebash
titlebreseq commands 
echo "module load bowtie/2.1.0" >> .profile  #this command updates your profile to automatically load the bowtie module
 
idev  #idev starts an "interactive development" mode which allows you to run computationally intensive tasks
 
module load bowtie/2.1.0   #If  #Breseqnot added to your profile:  Breseq uses bowtie to map reads, so this module must be loaded before you run breseq
 
breseq -j 12 -r lambda.gbk lambda_mixed_population.fastq > log.txt

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