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changes.mady.by.user Arindam Bhattacharya

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New Version 2

changes.mady.by.user Scott Patrick Hunicke-Smith

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NEW VERSION: Commands to use samtools with a bam file, input.bam,Latest version on Fourierseq: 0.1.18 installed 9/26/11 by SPHS

Example:

1. samtools mpileup -uf reference.fna aln1.bam aln2.bam | bcftools view -bvcg - > var.raw.bcf

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