...
OPTIONS:
-s Remove duplicate for single-end reads. By default, the command works for paired-end reads only.
-S Treat paired-end reads and as single-end reads.
Code Block |
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samtools rmdup -s <input.bam> <output.bam> |
...
...
OPTIONS:
-s Remove duplicate for single-end reads. By default, the command works for paired-end reads only.
-S Treat paired-end reads and as single-end reads.
Code Block |
---|
samtools rmdup -s <input.bam> <output.bam> |
...