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You will see two subdirectories called "RIP" and "CLIP", each with files we will look at during these exercises. Go ahead and copy the "ripseq_exercises" directory and all its contents to your scratch area and load up the cufflinks module (which contains cuffdiff):
| Code Block |
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cds
export BI=/corral-repl/utexas/BioITeam/
cp -r $BI/rnaseq_course/ripseq_exercises/ .
module load cufflinks/2.1.1 |
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