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- Download and install the Integrative Genome Viewer from the Broad Institute.
- Select "Human hg18" or "Human hg19" as the reference genome
- Get some data: File - > Load from Server… - > 1000 genomes - > Alignments - > CEU Trio WGS - > select those 3 samples
- Navigate to the rightmost exons of the GABBR1 gene
- Zoom in until you find some SNPs - they might be in exons or introns; there is also at least one example of a short insertion variant between exons 2 and 3
- Load and look at the SNP track: File - > Load from server - > Annotations - > Variants and Repeats - > dbSNP
This is whole genome coverage data; later we'll look at exome data.
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