Setting up a genome database and/or blast server for your new assembly
Genome databases
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It's beyond our scope in this course to show you how, but the general concept of building and hosting a genome database is not new and is not too hard if you use the GMOD toolkit. GMOD is the infrastructure behind a large number of organism databases including X. tropicalis, S. cerevisiae, E. coli, worm, fly, etc. - it's widely used and well supported. Educational sessions are offered frequently.
As a starting point, I would recommend you only start with the Gbrowse browser and avoid Chado unless you either have or want to get some experience with LAMP stacks, php, and MySql databases.
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