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Please install the following packages before class:
library(adegenet)
library(ade4)
library(pegas)
library(MASS)
library(ape)
library(genetics)
adegenet, ade4, pegas, MASS, ape, genetics.
Lecture Slides: statscourse.pdf
R code: biostats_popgen.R
More Resources:
- ?More on Principle Components Analysis: http://www.r-bloggers.com/a-new-dimension-to-principal-components-analysis/
- ?Use R! Books (UT library ebook link to full text)
- ?Applied Statistical Genetics with R: http://link.springer.com/book/10.1007%2F978-0-387-89554-3
- ?Analysis of Phylogenetics and Evolution with R: http://link.springer.com/book/10.1007%2F978-0-387-35100-1
- ?Next-gen sequencing: http://www.bioconductor.org/
- Package for microbe popgen: http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetic