Versions Compared

Old Version 31

changes.mady.by.user Anna Battenhouse

Saved on

compared with

New Version 32

changes.mady.by.user Anna Battenhouse

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  1. Prepare the vibCho reference index for bowtie2 from GenBank records
  2. Align reads using bowtie2, producing a SAM file
  3. Convert the SAM file to a BAM file (samtools view) 
  4. Sort the BAM file by genomic location (samtools sort)
  5. Index the BAM file (samtools index)
  6. Gather simple alignment statistics (samtools flagstat and samtools idxstatidxstats)

Obtaining the GenBank records

...