...
| Code Block |
|---|
|
cd
ln -s -f $SCRATCH scratch
ln -s -f $WORK$WORK2 workwork2
ln -s -f /workwork2/projects/BioITeam
mkdir -p ~/local/bin
cd ~/local/bin
ln -s -f /workwork2/projects/BioITeam/commonprojects/bincourses/launcher_maker.py
ln -s -f /work/projects/BioITeam/ls5/opt/cutadapt-1.10/bin/cutadaptCore_NGS_Tools CoreNGS
mkdir -p ~/local/bin
cd ~/local/bin
ln -s -f /workwork2/projects/BioITeam/ls5common/opt/multiqc-1.0/multiqcbin/launcher_creator.py
ln -s -f /workwork2/projects/BioITeam/ls5common/opt/samstat-1.09/samstatbin/launcher_maker.py
|
| Anchor |
|---|
| Catchup_bashrc |
|---|
| Catchup_bashrc |
|---|
|
.bashrc setup
...
| Code Block |
|---|
|
cd
cp .bashrc .bashrc.beforeNGSbeforeNGSTools |
Copy and configure the login profile for this class
| Code Block |
|---|
|
cd
cp /workwork2/projects/BioITeam/projects/courses/Core_NGS_Tools/tacc/bashrc.corengs.ls5stampede2 .bashrc
chmod 600 .bashrc |
...