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Code Block

language	bash

cd 
ln -s -f $SCRATCH scratch
ln -s -f $WORK work
ln -s -f /work/projects/BioITeam

mkdir -p ~/local/bin
cd ~/local/bin
ln -s -f /work/projects/BioITeam/common/bin/launcher_maker.py
ln -s -f /work/projects/BioITeam/ls5/opt/cutadapt-1.10/bin/cutadapt
ln -s -f /work/projects/BioITeam/ls5/opt/multiqc-1.0/multiqc
ln -s -f /work/projects/BioITeam/ls5/opt/samstat-1.09/samstat

Anchor
Catchup_bashrc
Catchup_bashrc
.bashrc setup

If you already have a .bashrc set up, make a backup copy first. You can restore your original login script after class is over.

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