This page should serve as a reference for the many "things Linux" we use in this course. It is by no means complete – Linux is **huge** – but offers introductions to many important topics.
...
- Macs and Linux have a Terminal program built-in
- Windows options:
- Windows 10+
- Command Prompt and PowerShell programs have ssh and scp (may require latest Windows updates)
- Start menu → Search for Command
- Putty – http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html
- simple Terminal and file copy programs
- download either the Putty installer or just putty.exe (Terminal) and pscp.exe (secure copy client)
- Windows Subsystem for Linux – Windows 10 Professional includes a Ubuntu-like bash shells
- See https://docs.microsoft.com/en-us/windows/wsl/install-win10
- We recommend the Ubuntu Linux distribution, but any Linux distribution will have an SSH client
- Command Prompt and PowerShell programs have ssh and scp (may require latest Windows updates)
- Windows 10+
Use ssh (secure shell) to login to a remote computers.
Code Block | ||||
---|---|---|---|---|
| ||||
# General form: ssh <user_name>@<full_host_name> # For example ssh abattenh@ls6.tacc.utexas.edu |
...
Code Block | ||||
---|---|---|---|---|
| ||||
for fname in *.gz; do echo "$fname has $((`zcat $fname | wc -l` / 4)) sequences" done |
quotes matter
We saw how double quotes allow the shell to evaluate certain metacharacters in the quoted text.
...