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ssh user@login8.stampede.tacc.utexas.edu cds mkdir samtools cd samtools cp /scratch/02423/nsabell/ $SCRATCH/core_ngs/alignment/bam/yeast_pairedend.bam . |
Sorting and Indexing a bam file: samtools index, sort
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ssh user@login8.stampede.tacc.utexas.edu cds mkdir samtools cd samtools cp /scratch/02423/nsabell/ $SCRATCH/core_ngs/alignment/bam/yeast_pairedend.bam . |
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