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You will need to ssh into lonestar6 for all the analysis in class. Macs come with terminal, so no installation is required. For windows laptops, install putty and winSCP. Putty is used for sshing into stampede2 and winscp is used for transferring files to and from stampede2.

Before logging onto TACC servers, multi-factor authentication must be set up. click here to begin setting it up.  The TOKEN DUO app works more reliably than the SMS option.

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#If you are using a terminal, open it:
ssh username@ls6.tacc.utexas.edu 
(replace username with your tacc username)

#If you are using putty, open it and enter the following:

hostname:  ls6.tacc.utexas.edu

#Upon prompting, enter username and password

#Under the Welcome to Lonestar6 banner, look for the project balances table
#These are the project allocations you belong to. Here are MINE:

cds

mkdir my_rnaseq_course

cd my_rnaseq_course

cp -r /work2/projects/BioITeam/projects/courses/rnaseq_course/day_1_partA . &

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