...
What do these graphs tell us ? Are there any apparent issues with about the structure of the data?
| Code Block | ||
|---|---|---|
| ||
#Transferring files from stampede2lonestar6 On your computer's side: Go to the directory where you want to copy files to. scp my_user_name@stampede2name@ls6.tacc.utexas.edu:/home/.../stuff.fastq ./ Replace the "/home/..." with the "pwd" information obtained earlier. This command would transfer "stuff.fastq" from the specified directory on stampede2lonestar6 to your current directory on your computer. |
We can make even more sophisticated heat maps with pheatmap using more sample metadata information.
...
There are also other R PCA functions. Here is a PCA R script that was written by a bioinformatician in the group. The first two lines tell you about the inputs to the pca script.
...