Spanish Linguistic Pipeline – Guide
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| Access the shared credentials to enter TACC Analysis Portal
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1.1 | Access TACC Analysis Portal https://tap.tacc.utexas.edu/jobs/ Enter Dr. Grasso’s account information generated by Stache and log in. | |||||||
1.2 | Submit a job on TACC by clicking on the dropdowns and selecting:
*Note. If you're struggling to get nodes on the vm-small queue, try the development queue. |
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If there are available nodes (picture A), you will be able to enter Jupiter right away. In that case, follow these steps:
Click on “connect”
Click on “work”
Click on “MADR_LingFeatPipelines”
If there are no available nodes (picture B), you will have to wait in a queue until it’s available.
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Click on “new”
Click on “folder”
Name folder. In this tutorial guide, I will use the name of InputFolder_Trial
If you cannot see the folder you created, click on “last modified” a couple of times. Sometimes it doesn’t update immediately.
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Enter the folder you just created
Click on “upload” and upload the input files
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Once the files have been uploaded, click on the new menu dropdown
Click on terminal
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Once you are in the terminal, follow these steps (if running several audio files):
Type cdw, press enter
Type cd MADR_LingFeatPipelines,press enter
Type conda activate spanishPipelineWithSpacyV3_6, press enter
Type or copy the command below, then press enter:
python spanishLingPipeline.py InputFolder_Trial/ spanishLing_TrialspanishLingTrialSupplementary_Output
Keep in mind that the red and green sections change depending on your input and output files. The purple section always remains the same.
The parts circled in red, green, and gold change depending on the name of your input and output files.
InputFolder_Trial is the name of my input file. Your command will change depending on the name you give your file. Remember that the exact ortography must match. If the name of the file that you uploaded is all in lowercase, the command in the terminal must be all in lowercase.
spanishLing_Trialand spanishLingTrialSupplementary_Output are the names is the name of the output file and output folder. You can change this part of the command (in the terminal) depending on the name you want to give your output file and folder.
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After writing your command and pressing enter, wait a few seconds. You will know when it’s done running when you see this at the bottom of the terminal (see picture, circled in red).
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Once the files are finished running, follow the next steps:
Go back to the notebook
Click on the refresh button (if needed)
If the generated files did not pop up, click on “last modified,” sometimes it takes a minute to update.
You will 1 output file in coma separated value version and 1 folder (see picture).
There will be two outputs: a spreadsheet named spanishLing_Trial_LinguisticFeatures.csv and a folder named PosMorphDepTree_spanishLing_Trial
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First, we want to download the linguistic features. Check the box with the csv file and click on download (picture A).
Then, enter the supplementary output folder and download the files one by one (picture B).
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Clear cache by typing the code rm -r ~/.cache/
Press enter
Then, log out from the terminal by typing the command logout(see picture A)
Press enter
Go back to the original TACC page and click on “end job”(see picture B).
IT IS VERY IMPORTANT TO END THE JOB AS THE NODES ARE VERY LIMITED. THE JOB WILL KEEP RUNNING UNLESS YOU COMPLETE THIS STEP.
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