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Python

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Python Modules

The default Python distribution for BioITeam members on TACC is the 2.7.2 Enthought distribution. This includes a plethora of packages beyond the standard set, including SciPy, NumPy and Biopython. The ordinary TACC Python default is an earlier version of Python, but a special .profile setting for BioITeam members automatically loads the newer TACC module for Python (2.7.2), along with the Enthought distribution.

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/corral-repl/utexas/BioITeam/lib/python2.7/site-packages

If you are using the standard BioITeam profile (or at least including it), your PYTHONPATH environment variable is set so that you can load Python modules in this special directory in the usual way. To load "my_special_module" in our special Corral directory, just run

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python setup.py install --prefix=/corral-repl/utexas/BioITeam/python2.7/site-packages
Using easy_install

Try easy_install as usual, but use the --install-dir=DIR flag, so you would type something like:

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easy_install --install-dir=/corral-repl/utexas/BioITeam/lib/python2.7/site-packages <my_new_awesome_python_package>