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Code Block
cdh


#If you already have a .bashrc set up, make a backup copy first.
cd
cp .bashrc .bashrc_beforeRNASEQ


#Copy a preconfigured login script
cp /work/projects/BioITeam/projects/courses/Core_NGS_Tools/tacc/bashrc.corengs.ls5 .bashrc
echo "export RNASEQ=/corral-repl/utexas/BioITeam/rnaseq_course_2016" >> .bashrc
echo#echo "export PATH=\$PATH:/corral-replwork/utexasprojects/BioITeam/common/bin/:/work/01184/daras/bin:/corral-repl/utexas/BioITeam/bin" >> .bashrc
chmod 600 .bashrc
source .bashrc


ls
#See if it took effect
echo $PATH
ls
$RNASEQ

The chmod 600 .bashrc command marks the file as readable/writable only by you. The .bashrc script file will not be executed unless it has these permissions settings. Note that the well-known filename is .bashrc (or .profile on some systems), which is specific to the bash shell.

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Now let's go on to look at the directory structure at Lonestar5.


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