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changes.mady.by.user Anna Battenhouse

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changes.mady.by.user Daryl Barth

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Comment: Added end of line carriate to bwa mem call

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Code Block
languagebash
cd $SCRATCH/core_ngs/alignment/bwamem
bwa mem -M hg38/hg38.fa fastq/human_rnaseq.fastq.gz 2>hs_rna.bwamem.log | \
  samtools view -b | \
  samtools sort -O BAM -T human_rnaseq.tmp > human_rnaseq.sort.bam

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