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Location: /home/jupyterhub/
Basic Install:
Before running anything do source /home/jupyterhub/hub_files/minicondainit
UTdirect Integration:
Add fenicsx
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source /home/jupyterhub/hub_files/minicondainit conda create -n fenicsx conda activate fenicsx conda install -c conda-forge fenics-dolfinx mpich pyvista matplotlib NumPy SciPy gmsh python-gmsh conda install ipykernel #For jupyerhub integraiton python -m ipykernel install --display-name fenicsx conda create -n class1 conda activate class1 conda install ipykernel regionmask numpy xarray cartopy netcdf4 metpy dask climlab conda create -n GEO416W conda activate GEO416W conda install datetime seaborn geopandas shapely ipykernel regionmask numpy xarray cartopy netcdf4 metpy dask climlab |
Julia Integration:
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export JUP=/home/jupyterhub/ #INSTALL JULIA cd $JUP;wget https://julialang-s3.julialang.org/bin/linux/x64/1.9/julia-1.9.2-linux-x86_64.tar.gz;tar -xvf *.tar.gz;rm *.tar.gz #For each REPO set the path and then install the packages export JULIA_DEPOT_PATH=$JUP/julia_pkgs/data_analysis-192 $JUP/julia-1.9.2/bin/julia -e 'using Pkg;Pkg.add(["CSV","DataFrames","IJulia","Plots","DelimitedFiles","NCDatasets","HTTP","BenchmarkTools","PyCall"]);' #edit kernel vi /root/.local/share/jupyter/kernels/julia-mp-1.9/kernel.json #display_name #location #ENV variable "env": {"JULIA_DEPOT_PATH":"/home/jupyterhub/julia_pkgs/data_analysis-192", "JULIA_NUM_THREADS": "4"}, #Copy Kernels from /root/.local/share/jupyter/kernels/XXXX to /home/jupyterhub/miniconda3/envs/hub/share/jupyter/kernels/XXXX and rename as needed #edit the JSON file |
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