Put this in your commands file: Code Block |
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bwa aln -t 6 -f bwa/SRR030257_1.sai bwa/NC_012967.1.fasta SRR030257_1.fastq
bwa aln -t 6 -f bwa/SRR030257_2.sai bwa/NC_012967.1.fasta SRR030257_2.fastq
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Why did we use -t 6 instead of -t 12 for multithreading? Both of our commands are going to go to a single node on Lonestar, so they should share the 12 available cores. |