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Now that we have backed up your profiles so you won't lose any previous settings, you can copy our predefined GVA2022.bashrc file from the /corral-repl/utexas/BioITeam/scriptsgva_course/ folder to your $HOME folder as .bashrc and the predefined GVA2022.profile as .profile from the same location before using the chmod command to change the permissions to read and write for the user only.

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Code Block
languagebash
titleHow to leave Lonestar stampede2 by logout or exit from a remote connection
collapsetrue
logout
# or
exit

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Code Block
languagebash
titleGo log back in to Lonestarstampede2
collapsetrue
ssh <username>@stampede2.tacc.utexas.edu

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Code Block
titleCreating a shortcut to the main Lonestar Stampede2 working directories
cdh
ln -s $SCRATCH scratch
ln -s $WORK work
ln -s $BI BioITeam

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In previous years, the pip installation program was used to install a few programs. While those programs will be installed through conda this year, the link here is provided to give a detailed walk through of how to use pip on TACC resources. This is particularly helpful for making use of the '--user' flag during the installation process as you do not have the expected permissions to install things in the default directories.

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