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gdtools compare -h |
the above will display instructions stating that gdtools compare needs a genebank (gbk) reference file, and .gd files to compare. The -o command is used to direct the output to a specific file name and/or location. | Expand |
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gdtools compare -o trimmed_vs_SSCS.html -r reference/REL606.masked.gff3 -r reference/1400flanking.gff3 SSCS_output/SSCS/output/output.gd SSCS_output/trimmed/output/output/output.gd |
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The comparison table as well as the output for the trimmed and SSCS reads can now be exported to your local computer for viewing. If you are using a unix (ie mac) operating system you can use the information given in one of the previous tutorials. If you are trying to view these files on a PC (ie classroom desktop) then you will actually need to transfer the entire folder using the sftp client. To do so use the sftp client ("filezilla") and log in using the same information you use to log into tacc through putty, then navigate to where you ran this data on scratch.