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Code Block
titleGet to the data and do the rest of the exercise in an IDEV session
#MAKE SURE YOU ARE IN THE RIGHT DIRECTORY
cds
cd my_rnaseq_course/day_3_partA/gene_expression_exercise/visualizations2
 
#MAKE SURE YOU ARE IN THE IDEV SESSION. YOU WILL KNOW YOU ARE IN AN IDEV SESSION BECAUSE YOUR PROMPT WILL HAVE A COMPUTE NODE NAME LIKE #C0124... OR YOU CAN TYPE HOSTNAME TO SEE THAT THE HOST NODE WILL HAVE A NAME LIKE #C0124...
#IF YOU DON'T HAVE ONE, REQUEST ONE BY USING ONE OF THESE COMMANDS:
idev -m 60 -q normal -A UT-2015-05-18OTH21164 -r RNASeq-WedRNAseq2
idev -m 60 -q normal -A UT-2015-05-18OTH21164


Code Block
titleLoad the DESeq2 biocontainers module
module load biocontainers
module load r-empiricalfdr.deseq2/ctr-1.0.3--r3.3.2_0

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