This page serves as a preliminary user guide for PyReconstruct, an extensible successor to RECONSTRUCT™ written from the ground up in Python. Please have a look at the source code on our lab's GitHub site. Question can be directed toward PyReconstruct's primary developers, Julian Falco (julian.falco@utexas.edu) and Michael Chirillo (m.chirillo@utexas.edu).
Basics
Installation
- Launching
- Starting new series
Images
- Change img dir
- Convert to zarr
Main window
Field
<This is all about field...>
- Field
- Tools
- One-by-one
- Palette
- Editing trace-palette
- Multiple trace palettes
- Increment buttons
- Visibility / viewing
List / List-operations
- Regular expressions
- Section lists / operations
- Trace list / tags
- Object list / groups
- Z-trace list
3D scene
3D Scene stuff...
Series operations
Calibration
Alignments (importing, changing, etc.)
Propagation operations
Importing / exporting
- Importing traces (no duplicates imported)
- Importing alignments
- Importing palettes
- Exporting back to legacy (remember some data lost)
Meta-data
Commenting / Flags
Curating
Miscellaneous
Extra stuff here...