Purpose

This page provides links to the IRC's GutHub MATLAB code repository as well as descriptions, instructions, and sample data.

Repository Location and List

The list of tools includes:

checkPNMode: a function that reports the mode of prescan normalization used to acquire a Siemens MR DICOM
dcm2jpg: a function that will convert a DICOM image to a JPEG image
dcmvolread: a function that will read all the DICOM files within a directory of a 3D scan, and order them for MPRs
ernst: a script that will calculate the Ernst angle for an MRI scan given the TR and tissue T1
movementtracker: a function that will read all MOSAIC DICOMs in a directory, coregister them (Affine), and plot the three rotational factors temporally
nameLikeXnat: a function that will copy or rename all DICOMs in a directory using XNAT's naming convention
nlv: a simple GUI-based DICOM viewer written for the NEU366L lab. Rudimentary tools included.
splitSiemensScans: a function that will take a bulk scan DICOM directory and split all the individual series into respective folders with intuitive names
v3: a simple 3 axis viewer for 3D datasets (usually used with dcmvolread to import the image data)