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Info

Meeting overview

  • Use the meeting as an opportunity to share updates on your progress, ask for feedback or guidance, and discuss any concerns you may have.

  • After the meeting, take note of any action items or next steps discussed, and follow through on them in a timely manner.

  • The purpose of these 1:1 meetings is to foster open communication, provide support and guidance, and ensure that you and your supervisor are aligned on goals and expectations.

Expand
titleOpen action items

✅ Open action items

Task report
pages93749249
isMissingRequiredParameterstrue

📝 Meeting minutes

Expand
titleMeeting Minutes Jun-July 2024

Date

Agenda

Notes, decisions and action items

MAIN TASK: Copying clipping data status from ARCHIVE 0.Connected_Speech_Clipping to Connected Speech Data analysis

Data Analysis Smartsheets- adding file type recording and saved as options

  •  Kyleigh McAlister Add columns of Recorded In and Saved As, as shown in WAB example but add columns for ALL other tasks
  •  Kyleigh will do this for all three languages

Ensure dropdown options are allowed

Allow for multiple select from dropdown for each column

  • WAIT for next step when Sonia gives green light-
  •  Kyleigh McAlister has organized list of samples with file types in lab folder
  •  Kyleigh McAlister and will add that data to the Data Analysis Smartsheet
  •  all data of saved as has been completed in all the data analysis smartsheets
  •  Kyleigh McAlister next task filling out file type for all pre-r01 samples in all the smartsheets How it was recorded Columns

Diana already included data on how it was saved for all pre-R01 Samples. For pre-r01 samples all samples were recorded through Zoom

Changed drop down of “saved as” options in the Connected Speech Clipping sheet

  • Decided we would allow for multiple options for the samples saved in audio and video and clipped in both formats

Double-check status of moving of clipping sheet for R01 samples to the Data Analyses Smartsheet -

In this Spanish Smartsheet: https://app.smartsheet.com/workspaces/vGQcrxvPX9fF449983RW8CC9WrcvQMV82Rhv9gw1

Copy and paste each row of data from the yellow ID to the row of the same timepoint of the participant but without the yellow highlighting

  •  Ana Elisa Quinonez Camacho will copy and paste for Spanish
  •  Sonia Marqués will start the process for Catalan – Ana Elisa will copy and paste-same process
  •  SMK English - – Ana Elisa will copy and paste-same process

Mid-tx video clipping

  • All recordings are in Zoom, when possible as .m4a, recorded as and saved as. The same process in audacity can be used.
  •  Sonia Marqués reminder to clinicians to export and upload m4a file to CS data raw folder - indicating where - send reminder, update sop
  •  Redcap midtx add variable for clinician speech, and update sops

Transcription- Updating file structure

Copying files from here: Bilingual_PPA_Samples_UTBattery to here: using the reports to check status:

  1. B--Connected Speech_Data-Clinical Trial- Spanish

4.PicnicScene_coded_chat

  1. ImportantEvent_coded_chat

4.CatRescue_coded_chat

  1. B--Connected Speech_Data-Clinical Trial- Catalan

4.PicnicScene_coded_chat

4.mportantEvent_coded_chat

4.CatRescue_coded_chat

  1. B--Connected Speech_Data-Clinical Trial- English

  2. 4.PicnicScene_coded_chat

    4.mportantEvent_coded_chat

    4.CatRescue_coded_chat

  •  Diana Cruz copy files checking the edit date in box, before november 2023 all transcriptions were not checked for revisions and repetitions

Simultaneously update status data of WHAT has actually been transcribed

Missing will be status if it says it was transcribed but cannot be located

2.Planning MINT

English smartsheet different columns, why?? - https://app.smartsheet.com/sheets/3w8g9fjmv3mV5RwwcpR7rGWMhxgPr8W5qr437F71

  •  Kyleigh McAlister Check that English Smartsheet is the same as Spanish Smartsheet. There are some missing columns in the Data analysis Smartsheets
  • towards the end of sheet there are columns in Spanish and Catalan and need to be deleted and some columns need to be added to the English sheet

MINT drop down (check if it's okay, added to the 3 smartsheets, Spanish, Catalan, English) 

  • Clipped

  • Administered but not clipped

  • Not administered

  • Missing

  • No need to add format of file type for MINT

1.English Audios Pre-R01

KPM- Need to check if Clipping guide was updated correctly

non-r01, eval basica

where to save: 1 separate MAIN folder with everyone that is not R01.

VISTA Clipping

  • BISE013’s files: .wav files were not yet being collected consistently for VISTA clipping, so we need to use all video for this patient
  • BISE005 files have only partial data and partial observations at post so Ana Elisa will include what we have and create a readme
  •  BISE014: Sonia Marqués needs to see if pre-treatment wav files were collected in Spanish and Catalan and export and if we don’t have we will make decision after
    •  SMK found them and will export them and upload them in wav files and will let Ana Elisa know

Video Clipping Guide

Reclipping-

Ana Elisa found some audios that needed to be reclipped from Kayle, Kyleigh and Shayla have helped clipping them

VISTA suggestion

  •  Ana Elisa Quinonez Camacho add column with drop down that informs if data should be used from the MB data POM sheet excels or whisper
  •  add in VISTA POM guide step of checking ortography

VISTA

CS instrument change

  •  add midtx timepoint to CS instrument?
  •  change made in CS1 Span make to all CS instruments

Kyleigh last day

  •   Check lab notebook, include anything in wiki, delete archived files
  •  training Shayla complete!

Status
colourPurple
titleCLIPPING

  • Decisión 20241003- Siempre hacer clipping según las indicaciones de Dr.Grasso, si no por default siempre hacer primero las de la fecha más antigua.  

  • Shayla downloads box drive or box sync for next meeting

  • Ask Ana Elisa to adding SMK and Shayla to channel 

  • access to Dr.Henry's smartsheet - use it to edit when necessary, but it's more recommended to use your own account for general tasks

  • add column for date for the samples in 0.VISTA_Probes 

    • asignar a Hallel y Jada de añadir las fechas (cuando acaben de hacer clipping de las muestras que les faltan)

  • Clipping progress

    • VISTA - ready all timepoints?

      • some of them we used the zoom, no audio, -- this is documented in lab notebook -- SMK: recommend having this information in the 0.VISTA_Probes smartsheet 

        • TASK: adding a column in 0.VISTA to indicate if sample is missing in audio -- "Audio uploaded and copied to box" "yes, no, missing, yes but audio unuseable" 1. Missing audio and another column of "note in regards to missing sample"

    • CS - ready all timepoints?

    • TASK: reviewing if they are OBS or Clinical Trial looking at 

      • Option A. Redcap, anamnesis --- future task: create report of CS

      • Option B. Madr participant information

    • Task for SMK- monthly check that the audios are correctly saved

    • Midtx audios clarified

Expand
titleNovember 2024

Date

Priorities, Tasks, & Assignments 🥼 Notes, Progress, or Issues 📔

Important Links to Projects 🔗

  • Diana’s update

  • Started on English pre R01, but not yet complete (there is a lot of missing videos).

Status
colourPurple
titleCLIPPING

  • Decisión 20241003- Siempre hacer clipping según las indicaciones de Dr.Grasso, si no por default siempre hacer primero las de la fecha más antigua.  

  • Shayla downloads box drive or box sync for next meeting

  • Ask Ana Elisa to adding SMK and Shayla to channel 

  • access to Dr.Henry's smartsheet - use it to edit when necessary, but it's more recommended to use your own account for general tasks

  • add column for date for the samples in 0.VISTA_Probes 

    • asignar a Hallel y Jada de añadir las fechas (cuando acaben de hacer clipping de las muestras que les faltan)

  • Clipping progress

    • VISTA - ready all timepoints?

      • some of them we used the zoom, no audio, -- this is documented in lab notebook -- SMK: recommend having this information in the 0.VISTA_Probes smartsheet 

        • TASK: adding a column in 0.VISTA to indicate if sample is missing in audio -- "Audio uploaded and copied to box" "yes, no, missing, yes but audio unuseable" 1. Missing audio and another column of "note in regards to missing sample"

    • CS - ready all timepoints?

    • TASK: reviewing if they are OBS or Clinical Trial looking at 

      • Option A. Redcap, anamnesis --- future task: create report of CS

      • Option B. Madr participant information

    • Task for SMK- monthly check that the audios are correctly saved

    • Midtx audios clarified

Task report
isMissingRequiredParameterstrue

Status
colourBlue
titleTranscription

SPANISH Ana Elisa+Whendy updates:

  • Dr Santos transcriptions

    • transcriptions - all done

    • reliability ratings in July - Ana Elisa lab notebook

      • double rate 10%, ratings were quite high, all above 80%

  • Kesha paper - Connected Speech WAB picnic scene lvPPA and nfvPPA pre and post - ALL transcribed (pre and post)

    • SMK asks to transcribe new samples: BISE020, BILP029 (transcribed by Whendy and AE during week of 10/4) - also completed.

    • Post not for Kesha’s paper, but transcribed because some pre samples were missing/bad audio and also because some postx were going to be used for AoA but weren’t used

    • Reliability only ran for POST- for Spanish, 4 transcriptions,

      • all ok, high reliability

  • -VISTA samples - in progress re-revising transcriptions after new transcription rules.

  • Training Spanish transcribers

    • Alejandra - difficulty in tricky sample - reliability 80%, if she’s supervised - whisper runner!

    • Alexa - whisper runner!

  •  meeting with them, orient them to the smartsheet, training for whisper,
  • Lucian

CATALAN - SMK updates:

Status
colourRed
titleRELIABILITY

Status
colourYellow
titlePLANNING

  • Back ups for transcriptions - copy always the folder before running to analysis

    https://cloud.wikis.utexas.edu/wiki/x/BYFZAw

  • Decision with Andrew CAC

    • WAB picnic -

    • VISTA spontaneous probes -

  • Decision Alexa and Alejandra rename audios from VISTA to remove 1 and 2 from Spa

    • And let clippers know that they should stop naming the files with 1 and 2

Next meeting

Status
colourYellow
titlePLANNING

image-20241105-212418.png
  • Castilian dialect - regional variation

  • Mexico dialect

  • Puerto Rico dialect

  • Catalan - regional variation, català-central, etc.,

Rule add dialect of participant to the drop down

other info:

  • Hometown (where did they grew up)- sociodemographic questionnaire

CLIPPING

Next tasks:

Panel
panelIconIdatlassian-note
panelIcon:note:
bgColor#B3F5FF

Coordination of meetings

  • Meetings needed, when

    • Connected Speech planning (structure) - tasks pending - pre-r01 data, MINT.. see previous notes, no meeting needed, just more support, clipping students can help

    • Connected speech and VISTA transcription progress + Connected Reliability process

    • Connected Speech Clipping (Shayla lead)

    • Connected Speech Whisper (Whendy lead) Alejandra, Alexa - once trained just check every 2 weeks how they are doing

    • Connected Speech data analysis

Code switches

  • we have noticed that fo Spanish samples code switches are transcribed sometimes like (difficult on how similar languages are)

    • paraphasias, fragments, xxx

    • SOLUTION:

      • PROPS1: include it within the reliability, Rater 2 should be Helena/Núria/Sonia

      • PROPS2 (CWR): Having a code switching checker, if she notices a code switch she checks it in the smartsheet -

        • Alyne (brasilian spa-cat, recognizing code switching) non native speaker

        • Do a test (5 samples), if she misses one code switch is out - influence of catalan of samples, take notes, grammar, vocabulary, - 90% accuracy, (blinded) - transcripts+audios

      • PROPS3 (SMK): Helena/Núria/SMK listen to all WAB picnic and change if there are code switches - mark it in column in Smartsheet - Decide task by task – maybe Núria first

  •  create a column in CATALAN, SPANISH, ENGLISH smartsheet to check if there is a code-switch

recommendation to use chat to ask questions in case there is a code-switch

Training -CATALAN transcriptions - Helena

Helena training complete, high reliability

  • next steps - Diana has to give access to all systems

  • which samples assign?

    • 1. CS picnic scene reliability? - 1 more sample

    • 2. VISTA samples?

Chat preguntas transcripción

  1. Cuanto tiempo toma hacer preguntas-respuestas

  2. sistema mejor?

  3. doubts

Discussion - effect on reliability, faster-more efficient

Have same for Helena

check by Mor doesn’t work

Whisper

Reliability

Panel
panelIconIdatlassian-note
panelIcon:note:
bgColor#B3F5FF

transcription questions

Question transcription - final decision, how to transcribe

  • as it is

  • phonological paraphasias

BISE015_Pre2_VISTA_AmigosYApoyo

"entonces ellos me invita <a &+visitars> [//] a [/] a visitar

su casa."

BISE015_Pre2_VISTA_AmigosYApoyo

"entonces ellos me invita <a &+visitars> [//] a [/] a visitar su casa."

Link a .cha file: https://utexas.box.com/s/xjv5crmfab2w1e8irbv73vbrurmyy0j9

Link al audio: https://utexas.box.com/s/vdwubth9q1w4ot6iiqcbthd1iamahzgy (empieza como en el minuto 1:09)

Words not in CLAN library

example: ma (madre) detected as copula

mamí is not correct - correct in library

  • issues with adjectives in MOR

https://utexas.box.com/s/7cl2a29xk7ddvc2yn0woa6cvthcefyat

Decision: code as paraphasia or keep as-is

Sonia Marqués add to the guide

Expand
title9th of December 2024

Date

Priorities, Tasks, & Assignments 🥼 Notes, Progress, or Issues 📔

🔗

Next meeting

Status
colourYellow
titlePLANNING

  •  Andrew Collins list of options of drop downs for Best estimate dialect, here is a draft: https://utexas.box.com/s/ktgzmnrte2t4uujmpg0uq479ew58mqk8 after consensus in next meeting, Sonia will add it on Smartsheet - add a column “Best estimate dialect” with all dialect options, drop down options specially for acoustic analysis, make list, consensus and create
  • Castilian dialect - regional variation

  • Mexico dialect

  • Puerto Rico dialect

  • Catalan - regional variation, català-central, etc.,

Rule add dialect of participant to the drop down

other info:

  • Hometown (where did they grew up)- sociodemographic questionnaire

CLIPPING

Next tasks pending to assign:

Panel
panelIconIdatlassian-note
panelIcon:note:
bgColor#B3F5FF

Coordination of meetings

  • Meetings needed, when

    • Connected Speech planning (structure) - tasks pending - pre-r01 data, MINT.. see previous notes, no meeting needed, just more support, clipping students can help

    • Connected speech and VISTA transcription progress + Connected Reliability process

    • Connected Speech Clipping (Shayla lead)

    • Connected Speech Whisper (Whendy lead) Alejandra, Alexa - once trained just check every 2 weeks how they are doing

    • Connected Speech data analysis

Code switches

  • we have noticed that fo Spanish samples code switches are transcribed sometimes like (difficult on how similar languages are)

    • paraphasias, fragments, xxx

    • SOLUTION:

      • PROPS1: include it within the reliability, Rater 2 should be Helena/Núria/Sonia

      • PROPS2 (CWR): Having a code switching checker, if she notices a code switch she checks it in the smartsheet -

        • Alyne (brasilian spa-cat, recognizing code switching) non native speaker

        • Do a test (5 samples), if she misses one code switch is out - influence of catalan of samples, take notes, grammar, vocabulary, - 90% accuracy, (blinded) - transcripts+audios

      • PROPS3 (SMK): Helena/Núria/SMK listen to all WAB picnic and change if there are code switches - mark it in column in Smartsheet - Decide task by task – maybe Núria first

  •  create a column in CATALAN, SPANISH, ENGLISH smartsheet to check if there is a code-switch

recommendation to use chat to ask questions in case there is a code-switch

Training -CATALAN transcriptions - Helena

Helena training complete, high reliability

  • next steps - Diana has to give access to all systems

  • which samples assign?

    • 1. CS picnic scene reliability? - 1 more sample

    • 2. VISTA samples?

Chat preguntas transcripción

  1. Cuanto tiempo toma hacer preguntas-respuestas

  2. sistema mejor?

  3. doubts

Discussion - effect on reliability, faster-more efficient

Have same for Helena

check by Mor doesn’t work

Whisper

RELIABILITY CS transcriptions

  • Separate meeting with Camille about how to join POM+reliability for transcriptions
  •  For VISTA transcriptions: Folder structure for transcription reliability is created
  •  For VISTA transcriptions: Smartsheet for reliability once decision is made on where to capture rely output scores
  •  Shayla Fernandez Amaya to 1) add reliability columns to VISTA Transcription Smartsheet using the example Sonia created for Pre1Castellno (higlighted in yellow); 2) create a row with the timepoint and language only ; 3) Remove timepoint from the Smartsheet header by

Smartsheet link: https://app.smartsheet.com/sheets/29c56pPH98JW66r6h7fxp8M3rM5cv6xQJqPJm4m1

  • CS structure was already decided upon
  • Ana Elisa Quinonez Camacho created the CS folder structure for Spanish for Kesha’s project and for Dr. Santos' project during the week of 11/25. Note, since this process/structure was developed after reliability was run, the transcriber 1 samples are the final transcripts with consensus.

Dr. Santos' transcriptions

  •  Ana Elisa Quinonez Camacho For Dr. Santos' transcriptions: Add to the Connected Speech Smartsheet add 1) NHC ID, 2) Trained Coder, 3) Picnic scene status 4) Create a column with note in CS for when audio is very poor 5) Reliability by

Kesha’s Samples

  •  For Kesha’s samples: Final sample needed for Spanish: Whendy Avila Motta BIOBS003- Observacional branch- transcription needs to be added by
  •  For Kesha’s samples: For Catalan: Helena is waiting for a BIOBS003 to go through Whisper as well
  •  For Kesha’s project: Reliability is very high for transcriptions and is finished
  •  For Kesha’s project: Samples are stored in three places: the master spreadsheet for the project will indicate where the sample is saved. Sonia Marqués to ensure that every patient has this cell complete
  •  Came up during discussion with Kesha’s project- probably Ana Paola to move samples over Sonia Marqués to create structure for Ana Paola, but another student could be selected

VISTA probes

Update from Ana Elisa VISTA https://utexas.box.com/s/krxn8jx3vza7rwy98bziou0e0wfgnrdh In progress, need to discuss in meeting. Ana Elisa Quinonez Camacho added the PicnicScene_WAB_PostTX_Coded_Rely samples and the PicnicScene_WAB_PreTX_Coded_Rely samples to this folder structure.

  • Decision made in meeting: VISTA probes: We decided that the reliability scores for the post-tx WABs will be stored in the folder for the VISTA paper on Box and that in the Reliability Smartsheet, we will list the VISTA paper as the project for post, and both the VISTA and Kesha’s project for the pre-treatment WABs
  •  VISTA ProbesAna Elisa Quinonez Camacho to update the he Reliability Smartsheet, we will list the VISTA paper as the project for post, and both the VISTA and Kesha’s project for the pre-treatment WABs by

TRANSCRIPTION STATUS

GENERAL DOUBTS:

______________________________________________________________________________

SPANISH

  • Connected Speech Picnic scene:

    •  CS Reliability completed
  • VISTA probes:

  • Whendy as of 12/2: Finished transcribing BISE013_Post2, making final revisions, not yet ran through CLAN. Began transcribing BISE004.

  • Ana Elisa 12/1: Currently working on BISE014_Post1. Need to revise BISE015_Post1, BISE014_Post2, and BISE015_Post2.

    • Note Catalanismo BISE014_BACC005_LaDificultadParaHablar: *PAR: estoy haciendo ejercicios para retardar la [//] el deterioramento [: deterioro. Decision on 12/3, code as phonological paraphasia.

  • Dr.Santos samples:

  •  all samples completed?
  •  TASK? move Dr.Santos excel to SPANISH Connected speech smartsheet --better to track picnic scene completion and reliability
    •  Create column in Connected Speech like the VISTA smartsheet: Background noise? Pre1 Castellano, No

Yes-Mild

Yes-Moderate

Yes-Severe


WHISPER

Expand
title16th of December 2024

Date

Priorities, Tasks, & Assignments 🥼 Notes, Progress, or Issues 📔

🔗

Status
colourYellow
titlePLANNING

  •  Andrew Collins list of options of drop downs for Best estimate dialect,
  • here is a draft: https://utexas.box.com/s/ktgzmnrte2t4uujmpg0uq479ew58mqk8 after consensus in next meeting, Sonia will add it on Smartsheet - add a column “Best estimate dialect” with all dialect options, drop down options specially for acoustic analysis, make list, consensus and create

  • Castilian dialect - regional variation

  • Mexico dialect

  • Puerto Rico dialect

  • Catalan - regional variation, català-central, etc.,

Rule add dialect of participant to the drop down if it doesn’t appear in it

other info:

  • Hometown (where did they grew up)- sociodemographic questionnaire

CLIPPING

Next tasks pending to assign:

Code switches

  • we have noticed that fo Spanish samples code switches are transcribed sometimes like (difficult on how similar languages are)

    • PROPS2 (CWR): Having a code switching checker, if she notices a code switch she checks it in the smartsheet -

      • Alyne (brasilian spa-cat, recognizing code switching) non native speaker

      • Do a test (5 samples), if she misses one code switch is out - influence of catalan of samples, take notes, grammar, vocabulary, - 90% accuracy, (blinded) - transcripts+audios

  •  create a column in CATALAN smartsheet to check if there is a code-switch
  •  recommendation to use chat to ask questions in case there is a code-switch

Training -CATALAN transcriptions - Lucian

Whisper

Sonia Marqués create 3 report with whisper transcription columns (SPA, CAT, ENG)

  • Priority now VISTA

RELIABILITY CS transcriptions

  •  scores
  •  Shayla Fernandez Amaya to 1) add reliability columns to VISTA Transcription Smartsheet using the example Sonia created for Pre1Castellno (higlighted in yellow); 2) create a row with the timepoint and language only ; 3) Remove timepoint from the Smartsheet header by

Smartsheet link: https://app.smartsheet.com/sheets/29c56pPH98JW66r6h7fxp8M3rM5cv6xQJqPJm4m1

  • Separate meeting with Camille about how to join POM+reliability for transcriptions
  •  For VISTA transcriptions: Smartsheet for reliability once decision is made on where to capture rely output scores
  • CS structure was already decided upon

Dr. Santos' transcriptions

  •  Ana Elisa Quinonez Camacho For Dr. Santos' transcriptions: Add to the Connected Speech Smartsheet add 1) NHC ID, 2) Trained Coder, 3) Picnic scene status 4) Create a column with note in CS for when audio is very poor 5) Reliability by

Kesha’s Samples

  •  For Kesha’s samples: Final sample needed for Spanish: Whendy Avila Motta BIOBS003- Observacional branch- transcription needs to be added by
  •  For Kesha’s samples: For Catalan: Helena is waiting for a BIOBS003 to go through Whisper as well
  •  For Kesha’s project: Reliability is very high for transcriptions and is finished
  •  For Kesha’s project: Samples are stored in three places: the master spreadsheet for the project will indicate where the sample is saved. Sonia Marqués to ensure that every patient has this cell complete
  •  Came up during discussion with Kesha’s project- probably Ana Paola to move samples over Sonia Marqués to create structure for Ana Paola, but another student could be selected

VISTA probes

Update from Ana Elisa VISTA https://utexas.box.com/s/krxn8jx3vza7rwy98bziou0e0wfgnrdh In progress, need to discuss in meeting. Ana Elisa Quinonez Camacho added the PicnicScene_WAB_PostTX_Coded_Rely samples and the PicnicScene_WAB_PreTX_Coded_Rely samples to this folder structure.

  • Decision made in meeting: VISTA probes: We decided that the reliability scores for the post-tx WABs will be stored in the folder for the VISTA paper on Box and that in the Reliability Smartsheet, we will list the VISTA paper as the project for post, and both the VISTA and Kesha’s project for the pre-treatment WABs
  •  VISTA ProbesAna Elisa Quinonez Camacho to update the he Reliability Smartsheet, we will list the VISTA paper as the project for post, and both the VISTA and Kesha’s project for the pre-treatment WABs by