Page Comparison

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Login to ls5 at TACC. Execute these commands to to set up access to the multiqc binary:

module load python
export PATH="/work/projects/BioITeam/ls5/bin/multiqc-1.0:$PATH"
export PYTHONPATH="/work/projects/BioITeam/ls5/lib/python2.7/siteannab-packages:$PYTHONPATH"

mkdir -p $SCRATCH/byteclub/multiqc

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# make sure it is working...
multiqc --help

Produce a consolidated FastQC report

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This is where MultiQC's power comes in. You can point MultiQC to a directory where FastQC has been run and it will magically produce a consolidated report.

For example, logged in to ls5 at TACC, first stage a directory where FastQC has been run:

mkdir -p $SCRATCH/byteclub/multiqc/01_fastq
cd $SCRATCH/byteclub/multiqc/01_fastq
ln -s -f /work/01063/abattenh/projects/byteclub/multiqc/fastqc
ln -s -f $SCRATCH ~/scratch

Now this is all it takes to produce a basic MultiQC report:

cd $SCRATCH/byteclub/multiqc/01_fastq
multiqc .