Byte Club

2024 Presentations

• Multi-Omics data analysis - Dennis Wylie, CBRS

• Multi-Dataset Analysis Tools- Dhivya Arasappan, CBRS

  • RRHO2 code

  • WGCNA Consensus modules code

• Spatial transcriptomics using visium and xenium- Nihal Salem, WCAR

Past Presentations

• Tag-Seq- Jessica Podnar, GSAF Apr 2018

• Using MultiQC to produce consolidated QC reports  – Anna Battenhouse, CCBB, GSAF, Marcotte & Iyer labs, Oct. 2017

• Using LINCS to identify novel drugs for alcohol dependance treatment - Laura B. Ferguson, Harris Lab

• Near-optimal RNA-Seq quantification with kallisto - Anna Battenhouse, Iyer lab

• Benchmarking of RNA-Seq tools - Raghav Shroff, Ellington lab

• Reproducibility of SNP calling in multiple Sequencing runs from singler tumors- Dakota Derryberry, Wilke Lab. This contains unpublished data, so please contact Dakota (dakotaz@utexas.edu) to request access to her slides.

• Songs of Assemblies and Expression: The Genome and Transcriptome of Alston’s Singing Mouse Scotinomys teguina - Da-Jiang Zheng, Phelps lab

• Listening to what genes are saying: Statistical learning from gene expression data - Dennis Wylie, CSSB

• MirUtils - Anna Battenhouse and Nathan Abell, Iyer lab

• New NGS sequencers, data delivery & storage options, and price changes: GSAF Update.   - Dr. Scott Hunicke-Smith, GSAF
  
  
  

Past Tutorials

• FastQC tutorial by Anna Battenhouse

• FastxToolkit tutorial by Dhivya Arasappan

• Samtools tutorial (PDF) by Benni Goetz

• assemble_trinity tutorial (PDF) by Benni Goetz

• RNA-Seq Library Types (PDF) by Jessica Podnar