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Or you can just copy a config file:

Code Block
languagebash
cd $SCRATCH/byteclub/multiqc/01_fastq
cp /work/01063/abattenh/projects/byteclub/multiqc/conf/02_simple_custom.yaml multiqc_config.yaml .

 

After saving this file, remove the previous MultiQC outputs and re-run the program:

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Code Block
titlemultiqc_config.yaml
# Titles to use for the report.
title: "ATAC-Seq QC Reports"
subtitle: null
intro_text: "MultiQC reports for Igor's ATAC-Seq proof-of-concept project."
report_header_info:
    - Sequenced by: 'GSAF'
    - Job: 'JA17277'
    - Run: 'SA17121'
    - Setup: '2x150'

# Change the output filenames
output_fn_name: mqc_report.html
data_dir_name: mqc_report_data

# Ignore these files / directories / paths when searching for reports
fn_ignore_files:
    - '*.dupinfo.txt'
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titleTip

Or you can just copy pre-made files:

Code Block
languagebash
cd $SCRATCH/byteclub/multiqc/02_bowtie
cp /work/01063/abattenh/projects/byteclub/multiqc/conf/04_fix_dupinfo.yaml multiqc_config.yaml
mkdir for_multiqc
cp /work/01063/abattenh/projects/byteclub/multiqc/for_multiqc/brain*.dupmetrics.txt for_multiqc/


After making this config file modification, you can now run multiqc again:

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