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- MultiQC produces neat, interactive plots in an HTML file.
- So it can be used as a basic plotting tool for many kinds of reports and data, not just those produced by NGS tools!
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I recommend using Chrome to view MultiQC reports. The HTML reports generated by MultQC rely heavily on JavaScript and other dynamic web content scripting tools, and not all browsers support them equally well. |
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module load python export PATH="/work/projects/BioITeam/ls5/binopt/multiqc-1.0:$PATH" export PYTHONPATH="/work/projects/BioITeam/ls5/lib/python2.7/annab-packages:$PYTHONPATH" # make sure it is working... multiqc --help |
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module load python export PATH="/work/projects/BioITeam/stampede/binopt/multiqc-1.0:$PATH" export PYTHONPATH="/work/projects/BioITeam/stampede/lib/python2.7/annab-packages:$PYTHONPATH" # make sure it is working... multiqc --help |
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- <prefix>.flagstat.txt - output from running samtools flagstat
- <prefix>.idxstats.txt - output from running samtools idxstats
- <prefix>.dupinfo.txt - output from running Picard MarkDuplicates
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To catch up, just use Anna's pre-made files:
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